Since one of us here doesn’t really like chocolate (can you imagine?), and every so often someone asks me if I have a vanilla cupcake recipe, I decided to post this gluten-free, super-charged vanilla cupcake recipe using coconut flour. My older son needs to minimize his almond intake right now – a bit challenging for me considering I was doing a lot of baking with almond flour, and I have a personal love for almonds. But it’s a good thing for us to rotate the foods we eat – that way we’re getting a variety of nutrients and fiber from different sources, for a well-balanced diet.
To get a very vanilla taste to these cupcakes, I use vanilla bean seeds. People do a lot of interesting things with vanilla beans. Besides steeping it in milk and cream when making vanilla ice cream, you can make your own vanilla extract, put it in your vacuum bag to freshen up your “environment”, or add it to baked and seasoned dishes, like in this recipe. I also added vanilla beans to the buttercream frosting on these cupcakes in the photo above.
Vanilla beans are not cheap, so if you don’t have one lying around or don’t want to invest the extra $, no worries – these cupcakes will still make someone’s day!
My original inspiration to give coconut flour a try for donuts & cupcakes, came from this post. And here’s a video on how to scrape the vanilla seeds from a vanilla bean.
So that I haven’t left you with a naked cupcake, here’s some posts that have frosting for your cupcakes:
- marshmallow and creamy vanilla frosting
- more marshmallow topping
- chocolate frosting using coconut oil
- buttercream frosting (vanilla, mocha, and chocolate)
- chocolate frosting using avocado
- honey and sprinkles make a great topping
Comfy Belly
Very Vanilla Cupcakes {using coconut flour}
I recommend parchment cupcake liners or silicone muffin liners for all cupcakes made with coconut flour.Ingredients
- 1/2 cup of coconut flour
- 1/4 teaspoon of baking soda
- 1/4 teaspoon of sea salt
- 4 eggs
- 1/3 cup of oil or butter (coconut oil, ghee, or cooking oil)
- 1/2 cup of honey (or maple syrup)
- 1 tablespoon of vanilla extract
- seeds from a vanilla bean (optional)
Method
- Preheat your oven to 350°F/175°C.
- For the cupcakes, combine all the dry in ingredients and blend well. I add the vanilla beans at the very end, in the wet batter.
- Add the wet ingredients to the dry ingredients and use a mixer to blend (get rid of any clumps of flour). Now, optionally, add the vanilla beans and blend well.
- Fill cupcake liners about 3/4 of the way with batter.
- Bake for about 20 minutes, or until a toothpick inserted in the center of a cupcake comes out clean.
- Cool and then frost.
- Store covered for a few days at room temperature, or the refrigerator for at least a week or so.
Makes 8 cupcakes








Yum! And just in time for birthdays around here!
I was just sitting here thinking about what to bake tomorrow with my son. I can’t wait to make these! I prefer maple syrup too! Thank you
Love vanilla cupcakes and missing them since turning Paleo…can’t wait to try this! thanks so much!
Just put them in the oven! Yummy smelling!
wow – you’re fast!
I have never used coconut flour but I have been meaning to- this recipe is spurring me to action. Off to the store I go!
How did you know that I have coconut flour to make something with? 1st time trying it. I love the seeing the vanilla seeds in the frosting – almost like sprinkles. The chocolate cupcakes look good too. Hmm . . . which one to make 1st? Thanks for posting this.
Oh gracious! I need these!!
We have a ton of coconut flour and were always looking for ways to use it. This is a good thing to remember when we need to use it up!
You are amazing! My son will be SOOO pleased. Thank you!
I’m going to try your thin crust pizza too! Many thanks!
Nice website! Greetings from Glory Foods.
These look great. We have a lot of August birthdays here. Your banana muffin recipe with chocolate chips and your flourless brownie recipe are staples in our house.
Love your recipes! Had my brother’s family over last pm and they took a few brownies home for later…
so…what’s the verdict on coconut flour for a 1 yr. olds birthday? would it be too much fiber – any thoughts?
Good question – which I don’t know the answer too. Sorry.
Yum! Lots of people liked them here. It’s good I made a double batch! The texture is really good. I can’t wait to try the yellow cake. Thanks.
I just got allergy results back and both almond and egg yolks are gone. I know I could sub 2 egg whites for per egg, but have you ever found anything else you could use instead of eggs? Would chia seed work? I love the lightness of coconut flour but don’t want to over use the egg whites. Ideas?
Flax seed works, I believe, but I haven’t tried it. Egg whites would probably be the best if you can do it, but check here as well: http://www.cybelepascal.com/?page_id=99
I substituted 3/4 cups flaxseed mixture and 1/4 cup banana. It’s great!
This website should help.
http://chefinyou.com/egg-substitutes-cooking/
great site. thanks for the link and the info!
Oh my gosh!!!!!!!!!!!!!!!!!!!!! These cupcakes are amazing!!!!!!!!! There are not enough exclamation points in the words. I made a chocolate mousse frosting with cocoa powder, heavy cream, 1 mashed banana, vanilla, maple syrup, soft butter and a tiny bit of coconut flour.My toddler and I just finished the last one and we are seriously thinking about making more.
love your frosting!
I found your website recently and I love your recipes. I would love to try replacing the honey with Truvia but I am scared to try it. I was wondering if I would need to add some liquid i.e more butter/ oil or another egg to replace the missing liquid of the honey. I would love any suggestions you might have. Thank you so much!
I’m not familiar with Truvia, but yes, you do want to replace the liquid from the honey or maple syrup with something – my instinct says water would be good enough.
Did you put vanilla bean in the icing?
Yes
Just made the vanilla cupcakes for my birthday! Yum! Remind me of nilla wafers, back in the day… only taste much better and are better for you. Thanks for posting!
Happy birthday!
So glad to see new recipes for coconut flour. After 2 years on SCD I became really allergic to almond flour from over exposure and since then well I just don’t even cook anymore
I can’t wait to try these.
Can I substitute the coconut flour for almond flour?
no – the ratio of ingredients would be different here. Look for my fluffy cupcake recipe.
I just made the vanilla and chocolate cupcakes of yours today! The flavor and textures are great! I was wondering if you or someone would happen to know what I am doing wrong. Both sets of my cupcakes are sunken-in in the middle…and I notice yours are nicely rounded on top. Could that mean I am mixing too much or not enough? I used butter and honey in both recipes…everything else was exactly as written. Our elevation is 3,000 — could that be affecting something? Thank you!
hmm. I only have the sinking with the almond flour and honey combo in baked goods. I wonder if it’s the honey? Is it softer in the middle? that would indicate it’s not fully baked. Otherwise, maybe add less honey?
I have coconut shreds. Can this be turned into coconut flour? It is organic unsweetened as well. Thanks!
If you have a food processor or high-speed blender, I’d say yes. You want it really ground up – like almost powder.
I added chocolate chips to these and melted chocolate on top, these also and they make wonderful chocolate chip cupcakes!
Oooooh, these were gooood
I’m making another batch today because the first 8 disappeared! YUMMY! Thanks for sharing!
Perfect! I added mini chocolate chips and baked a 9″ round cake for my 3-yr’s birthday. He loved it, brother and sister loved it, and my husband said, “What cake is this? It’s delicious!!” — probably the only gluten free cake he’s ever had, and my first to bake from scratch. I’m the only one eating “mostly-paleo” on purpose and I will totally use this recipe again! Very nice cake, worked at high altitude (5000ft), and great to have a non-chocolate option. I bet it would be good with raspberries stirred in. Oh and the cake took 20 min in the oven.
I made these and added the zest & juice of one clementine to the batter instead of the vanilla beans — they were SO good!! Thanks for the awesome recipe!!!
i just made these and they just came out of the oven. i haven’t tried them but they smell amazing and licking the mixer paddle proved that they are going to taste great. however, every time i bake with coconut flour, my batter thickens up and becomes “scoopable”, read more cookie dough. Is that how your batter looks? As a result, I don’t get a smooth surface on the top of the cupcake. It’s just a cosmetic thing but I’m just curious.
Thanks!
Just had this happen too. I think it’s from trying to get the lumps of flour out. Wondering if I had sifted the flour if it wouldn’t have been as lumpy….
Sifting might help, but it’s mostly the nature of coconut flour. Mixing it for a while is what I’ve found works the best.
(sorry about the late reply)
Yes, they are more “scoopable”, in general. Once trick I’ve found is if you leave the batter in the mixer and let the mixer “mix” for a while (I have an old Kitchen Aid mixer that keeps going) the batter does get thinner. So I recommend mixing for a while with coconut flour. Also let it sit for a bit to absorb the moisture.
I didn’t have success with these spreading in the cups or rising at all. Definitely not fluffy like the picture! They just cooked basically. So, do you keep mixing past the really thick stage and then it thins out? And what do you consider ‘a while’ as?
It sounds like something is missing from the batter. Maybe baking soda? Or enough eggs?
I got everything in there. Not sure what happened. Will have to just try again!
I did just come across your ‘baking with coconut flour’ post and saw the mixing instructions there.
They taste fine, just no the right texture!
Hi! Do you have a suggestion to use instead of honey for a sweetener? Would stevia work?
Thanks!
I haven’t used Stevia, but do a search on Stevia on the site. Others have used it along with glycerin for the added moisture that honey has. I sub maple syrup with honey, and some have used sugar-free maple syrup.
Pingback: Menu Plan #1 | Remember For Me Cooks
I baked these yesterday. They are absolutely amazing! Your SCD recipes are the best. Thank you sooo much.
Thanks! So glad you have a treat being on SCD
Pingback: Peanut Butter Protein Cupcakes
Pingback: Coconut flour conconctions. « hearts abroad
These turned out great. I was thinking about using the same recipe, but change vanilla extract for almond extract.
Pingback: Raspberry-Vanilla Cupcakes « NourishMMMnt.
I just baked these and they are divine! Thank you so much. I googled coconut flour cupcake and got directed to your site. I am definitely getting your site on my reader! Thanks a million.
Do you use non-stick cooking spray on the the cupcake liners?
No, but I use liners that are non-stick: http://astore.amazon.com/comfybelly-20/detail/B000FAIR96
Do you think this will taste as yummy if I freeze them for a few days before a birthday party then thaw and frost the day of the birthday party?
I would guess they would be ok, but not as good as when freshly made.
Made these using brown sugar instead of honey, and lard and coconut oil for the fat. Baked for 10 minutes in a muffin top pan. They taste like cake donuts!!
Hi.
I was wondering what type of oil you use to make these cupcakes? Is coconut oil okay? Thank you
yes, or vegetable oil, or butter.
I am vegan and I have egg replacers (the powder form you mix with water) and can I usees this in place of eggs?
I haven’t tried it, but it should work if it is meant to act as a binder.
Pingback: FAQ about SCD - A Jewel In The Making
Pingback: Day 8 - Gestational Diabetes | Wholesome WomanhoodWholesome Womanhood
I made these for my Daughter’s fourth birthday knowing they would be eaten by non~ gluten free, non grain free family. They passed the test with everyone. They were better than any gluten white cake cupcakes I have ever eaten. I have used coconut flour many times and seem to haveixed success with it but this was the best coconut flour recipe I have tried.
Pingback: Baking w/Coconut Flour & Black Bean Soup (Panera-style) | bugontherun
I’m also getting a cookie dough type texture. This is not a ‘batter’ by any means….have to roll it off the spoon to get it in the liner. I used 1/2 honey, 1/2 syrup and liquified coconut oil….and even tried adding a tad bit of water to see if it would thin, but it didn’t. I’m afraid they’re going to be more like a muffin….we’ll see.
Batters come in all shapes and sizes
. Yes, this can be more of a “scoopable” batter, but keep the faith. As long as you followed the directions it should be fine. BTW, the recipe calls for 1/2 cup of honey OR syrup.
I have some local honey that’s VERY sweet, so i used 1/4 cup of honey and 1/4 syrup, as I’ve found that just honey is too much.
Hi Erica,
Can I use a bundt cake pan? I am not sure if the consistency will change.
hmmm. I don’t know.
Pingback: MAGIC VANILLA CUPCAKES WITH COCONUT FLOUR (free from dairy, lactose, gluten & refined sugar! PLUS vegan vanilla frosting!) | Miss Marzipan
Wow! I just made this and it tastes amazing! Definitely for vanilla-lovers like myself! I didn’t have a muffin pan so I baked it for 30 minutes in a 7″ round cake pan and they came out perfect! Moist with a soft and crumbly texture. I did reduce the amount of honey to 1/3 cup as I prefer only lightly sweetened cakes. I also added some chopped macadamia nuts and dried cranberries because I happen to have some on hand.
I’m definitely making this again probably adding other dried fruit or nuts or even spices. I can’t thank you enough for sharing this wonderful recipe!
you’re welcome! Yes, I sometimes add less honey as well. It actually bakes well with a bit less honey. Cheers!
I just made these and they are fantastic! Thank you so much for the recipe! We’re new to gluten free, and baking is hard work, but these are a hit! Yum!
Jo-Anna
What kind of oil would you recommend using
I would say almost any oil but a finishing oil would work here. One with the least flavor would be good so it doesn’t over power the vanilla flavoring – my personal choice would be sunflower oil, coconut oil, or ghee.
hmm…these aren’t awful. Mine came out a bit dry and more muffin-like than cake-like. And they definitely need frosting because they don’t come out particularly pretty
I had very high hopes, as I’m trying these grain-free recipes for my son’s first birthday (we don’t feed him any grains). The only substitute I made was using liquid stevia and unsweetened applesauce in place of the honey/syrup since I’m a type 2 diabetic.
Yeah, I think this recipe really needs the full moisture of the liquid sweetener. Subbing in other ingredients is not always ideal.
I’m new to gluten free baking and this is my first recipe using coconut flour. These are the best cupcakes I’ve ever had!! They came out perfectly! Very moist and light with a wonderful coconut flavor. I also made the vanilla buttercream frosting (with maple syrup) and it is a perfect topping for the cupcakes. Actually, these cupcakes are so great they don’t even need frosting! Thank you for posting such yummy, simple, easy to make recipes! I’m looking forward to baking many more of your recipes!
Hello – I made these tonight, but I can’t figure out what it is I’m doing wrong. They came out TERRIBLY. They looked fine when I pulled them out of the oven, but when I went to remove them from the cupcake pan, i noticed that anything that was not directly exposed to the heat looked like a gelatinous mess. Upon further inspection, they were deflated and EXTREMELY oily and jiggly. When I picked one up, oil literally oozed from it into my hand. I followed the recipe and directions to a t. Now it’s just a lot of good ingredients wasted because these are too disgusting to eat. Any ideas what happened?
not sure, but did you follow the recipe, or sub any ingredients?